Available Tools

Below is a list of available typing tools utilizing camlhmp. Each tool is designed to analyze specific sequence data and generate a typing profile based on the schema provided.

Tip

If you've developed a typing tool that utilizes camlhmp, or know of one, we'd love to add it to this list. To do so, open an issue on the camlhmp GitHub repository

Tool	Organism	Description
pasty	Pseudomonas aeruginosa	in silico serogrouping of Pseudomonas aeruginosa isolates
pbptyper	Streptococcus pneumoniae	In silico Penicillin Binding Protein (PBP) typer for Streptococcus pneumoniae assemblies
sccmec	Staphylococcus aureus	A tool for typing SCCmec cassettes in assemblies