Changelog

v1.0.0 rpetit3/camlhmp "Dromedary" 2024/08/??

Added

• Added a mkdocs documentation site

Fixed

• fixed camlhmp-blast-regions unnecessary debug output
• fixed test schemas to match the new schema format

v0.3.1 rpetit3/camlhmp "Maybe a cat?" 2024/08/05

Fixed

• camlhmp-blast-alleles not having a default value for targets

v0.3.0 rpetit3/camlhmp "More bunnies and fewer baby birds" 2024/08/05

Added

• camlhmp-blast-alleles command to search alleles in a set of query sequences using BLAST algorithms

v0.2.2 rpetit3/camlhmp "Even a few baby birds" 2024/07/22

Fixed

• --version flag now works as expected

v0.2.1 rpetit3/camlhmp "And a bunch of birds" 2024/07/22

Added

• version output with schema name and version

Fixed

• Empty input files will no longer be processed

v0.2.0 rpetit3/camlhmp "Four little bunnies" 2024/07/22

Added

• camlhmp-blast-region command to search full regions of interest using BLAST algorithms
• added camlhmp_version, schema_version, and params to output files

v0.1.0 rpetit3/camlhmp "Little baby legs" 2024/04/30

Added

• camlhmp command to list all available commands
• camlhmp-blast command to search for targets in a set of query sequences using BLAST algorithms
• camlhmp-extract command to extract targets from a set of reference sequences
• excludes field to types section to allow for exclusion of targets from a profile
• replaced profiles section with types section to better reflect the schema structure
• output of results for camlhmp-blast

v0.0.1 rpetit3/camlhmp "Not even walking yet" 2024/04/24

This is a development release for getting things on PyPi and Bioconda. Not expected to be stable.

Added

• basics of camlhmp with a working example using partial SCCmec